PeptideShaker

Main category / Education
Sub category / Science
Developer / CompOmics
Filesize / 113357
Title / PeptideShaker


https://macpkg.icu/?id=61024&s=eklablog&kw=4wKf_PeptideShaker_v_1.16.39.app 4wKf_PeptideShaker_v_1.16.39.app

BUG FIX: Improved the handling of target only databases. BUG FIX: Solved a potential threading issue in the peptide mass estimation. BUG FIX: Cleaned-up the de novo import code. FEATURE IMPROVEMENT: Improved the cleaning of the project: preferences were not reset. BUG FIX: Tried to fix a possible null pointer in the peptide border title. Vaudel M, Barsnes H, Berven FS, Sickmann A, Martens L: SearchGUI: An open-source graphical user interface for simultaneous OMSSA and X!Tandem searches. Proteomics 2011;11(5):996-9.
Official:

MacBook Pro https://macpkg.icu/?id=61024&kw=1.16.35_PEPTIDESHAKER_JT3.DMG [120158 kb]
on 10.11 https://macpkg.icu/?id=61024&kw=PeptideShaker.version.1.16.41.vRifo.tar.gz [104288 kb]


Key list
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PeptideShaker 0.41.1 BUG FIX: Corrected an error in the parsing of the maximal precursor deviation allowed in the import filters. C++/Java There is a growing trend toward public dissemination of proteomics data, which is facilitating the assessment, reuse, comparative analyses and extraction of new findings from published data1, 2. This process has been mainly driven by journal publication guidelines and funding agencies. However, there is a need for better integration of public repositories and coordinated sharing of all the pieces of information needed to represent a full mass spectrometry (MS)–based proteomics experiment. An editorial in your journal in 2009, 'Credit where credit is overdue'3, exposed the situation in the proteomics field, where full data disclosure is still not common practice. Olsen and Mann4 identified different levels of information in the typical experiment: from raw data and going through peptide identification and quantification, protein identifications and protein ratios and the resulting biological conclusions. All of these levels should be captured and properly annotated in public databases, using the existing MS proteomics repositories for the MS data (raw data, identification and quantification results) and metadata, whereas the resulting biological information should be integrated in protein knowledge bases, such as UniProt5. A recent editorial6 in Nature Methods again highlighted the need for a stable repository for raw MS proteomics data. In this Correspondence, we report the first implementation of the ProteomeXchange consortium, an integrated framework for submission and dissemination of MS-based proteomics data. Changes in PeptideShaker 1.16.30 (October 4. 2018): LIBRARY UPDATE: Updated omssa-parser to version 1.12.0. LIBRARY UPDATE: Updated utilities to version 4.3.17. NEW FEATURE: PRIDE Reshake feature added for re-analyzing data in PRIDE. (beta)

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on OS X LtCgWo-Gifski-vers.3.7.0.tar.gz | 4960 KB | 1.10.0
10.13.6 DrawMol.v.1.3.245.psl3o.dmg | 24314 KB | 1.3.340
New Mac Pro BAND-IN-A-BOX.VER.2018.0.293.J28.ZIP | 70562 KB | 2020.0.263